diff --git a/templates/lua-template-runtime/cocos-project-template.json b/templates/lua-template-runtime/cocos-project-template.json
index 29dd54cb6c..d69785172f 100644
--- a/templates/lua-template-runtime/cocos-project-template.json
+++ b/templates/lua-template-runtime/cocos-project-template.json
@@ -1,7 +1,9 @@
 {
     "do_default": {
         "exclude_from_template": [
-            "frameworks/runtime-src"
+            "frameworks/runtime-src",
+            "runtime/config.json",
+            "runtime/version.json"
         ],
         "append_dir": [
             {